schrodinger PyMOL 2.5.7

Download schrodinger PyMOL 2 full version program free setup for Windows. Molecular visualization programs have become extremely valuable tools in many fields of science including computational chemistry and structural biology. They allow us to visualize and analyze the structure of molecules such as proteins, nucleic acids, and small organic molecules to a level of detail and customization that would be otherwise impossible to reach in a laboratory.

schrodinger PyMOL Overview

Schrodinger PyMOL is a powerful molecular visualization software widely used in the field of computational biology and bioinformatics. It provides researchers with a comprehensive suite of tools for analyzing and visualizing three-dimensional structures of biomolecules. PyMOL was initially developed by Warren L. DeLano and is now maintained and distributed by Schrodinger Inc., a leading provider of software solutions for drug discovery and molecular modeling. One of the key strengths of Schrodinger PyMOL is its user-friendly interface, which allows researchers to explore and manipulate complex molecular structures with ease. It provides a wide range of visualization options, including rendering molecules as sticks, ribbons, surfaces, or cartoons, and enables the user to apply various color schemes and labeling options to highlight specific features of interest. Another notable feature of Schrodinger PyMOL is its extensive support for molecular dynamics simulations. Researchers can load trajectory files from molecular dynamics simulations and visualize the conformational changes of biomolecules over time. This functionality is particularly useful for studying protein-ligand interactions, protein folding, and other dynamic processes. You may also like Wolfram Mathematica 13 Free Download

schrodinger PyMOL 2 Free Download

PyMOL also offers a rich scripting language that allows users to automate repetitive tasks, customize the software’s functionality, and create high-quality figures for publications. The scripting language is based on Python, making it accessible to users with programming experience. Furthermore, Schrodinger PyMOL integrates seamlessly with other software tools commonly used in computational biology and bioinformatics. It can read and write a wide range of file formats, allowing researchers to easily import and export data between PyMOL and other molecular modeling software packages. In summary, Schrodinger PyMOL is a versatile and widely used software tool for visualizing and analyzing biomolecular structures. Its intuitive interface, powerful visualization capabilities, support for molecular dynamics simulations, and scripting functionality make it an indispensable resource for researchers working in the field of computational biology.


  • Interactive Visualization: PyMOL offers an interactive 3D environment where users can explore and manipulate molecular structures with ease.
  • Multiple Representation Styles: It supports various representation styles such as sticks, ribbons, surfaces, spheres, and cartoons, allowing users to visualize molecules in different ways.
  • Advanced Coloring Options: PyMOL provides a wide range of coloring schemes, including atom-based, residue-based, electrostatic potential, and secondary structure-based coloring.
  • Labeling: Users can add labels to atoms, residues, chains, or any other molecular component, making it easier to identify and annotate specific parts of the structure.
  • Molecular Surfaces: PyMOL can generate molecular surfaces, which are useful for visualizing cavities, binding pockets, and molecular interactions.
  • Distance and Angle Measurements: It allows users to measure distances and angles between atoms or residues, aiding in structural analysis and characterization.
  • Electron Density Maps: PyMOL supports the visualization of electron density maps, which are important for studying X-ray crystallography and cryo-electron microscopy data.
  • Sequence Viewer: It includes a sequence viewer that displays the primary sequence of the molecule, highlighting residues and their properties.
  • Ramachandran Plot: PyMOL can generate Ramachandran plots, which provide information about the conformational quality of protein structures.
  • Hydrogen Bond Analysis: It enables users to identify and visualize hydrogen bonds within a structure, aiding in the study of molecular interactions.
  • Molecular Dynamics Simulation Support: PyMOL can load trajectory files from molecular dynamics simulations and visualize the time-dependent behavior of biomolecules.
  • Movie and Animation Creation: Users can create movies and animations of molecular structures, allowing for dynamic presentations and visualizations.
  • Structure Alignment: PyMOL offers tools for aligning multiple structures, facilitating the comparison of similar protein structures or structural changes.
  • Superposition: It enables users to superimpose multiple structures to highlight similarities or differences between them.
  • Mutagenesis and Structure Editing: Users can introduce mutations in the structure, add or delete atoms, and modify the conformation of residues.
  • Electrostatic Potential Calculations: PyMOL can calculate and visualize electrostatic potential maps, providing insights into charge distributions.
  • Secondary Structure Analysis: It can identify and assign secondary structure elements in protein structures, such as alpha-helices and beta-sheets.
  • Crystal Symmetry Visualization: PyMOL supports the visualization of crystal symmetry and unit cells, important for studying crystal structures.
  • Morphing: It allows users to morph between two different conformations of a molecule, aiding in the study of conformational changes.
  • Visualization of Ligand Binding Sites: PyMOL provides tools to visualize and analyze ligand binding sites, including binding pocket detection and characterization.
  • Virtual Reality (VR) Support: It offers VR integration, allowing users to explore and interact with molecular structures in a virtual environment.
  • Scripting: PyMOL has a powerful scripting language based on Python, enabling users to automate tasks, create custom workflows, and extend the software’s functionality.
  • Plugin Support: It supports plugins that provide additional functionalities and analysis tools, expanding the capabilities of PyMOL.
  • Publication-Quality Graphics: PyMOL generates high-quality graphics suitable for publication, including vector-based formats like PDF and SVG.
  • Image Rendering Options: It provides various rendering options, such as ray tracing and ambient occlusion, to enhance the visual appearance of molecular structures.

Technical Details

  • Software Name: schrodinger PyMOL for Windows
  • Software File Name: PyMOL-2.5.7-Windows-x86-x64.rar
  • Software Version: 2.5.7
  • File Size: 258 MB
  • Developers: schrodinger
  • File Password: 123
  • Language: Multilingual
  • Working Mode: Offline (You donÆt need an internet connection to use it after installing)

System Requirements

  • Operating System: Win 7, 8, 10, 11
  • Free Hard Disk Space: 1 GB
  • Installed Memory: 2 GB
  • Processor: Intel Dual Core processor or later
  • Minimum Screen Resolution: 800 x 600

What is the latest version of schrodinger PyMOL?

The developers consistently update the project. You can view the most recent software update on their official website.

Is it worth it to install and use Software schrodinger PyMOL?

Whether an app is worth using or not depends on several factors, such as its functionality, features, ease of use, reliability, and value for money.

To determine if an app is worth using, you should consider the following:

  1. Functionality and features: Does the app provide the features and functionality you need? Does it offer any additional features that you would find useful?
  2. Ease of use: Is the app user-friendly and easy to navigate? Can you easily find the features you need without getting lost in the interface?
  3. Reliability and performance: Does the app work reliably and consistently? Does it crash or freeze frequently? Does it run smoothly and efficiently?
  4. Reviews and ratings: Check out reviews and ratings from other users to see what their experiences have been like with the app.

Based on these factors, you can decide if an app is worth using or not. If the app meets your needs, is user-friendly, works reliably, and offers good value for money and time, then it may be worth using.

Is schrodinger PyMOL Safe?

schrodinger PyMOL is widely used on Windows operating systems. In terms of safety, it is generally considered to be a safe and reliable software program. However, it’s important to download it from a reputable source, such as the official website or a trusted download site, to ensure that you are getting a genuine version of the software. There have been instances where attackers have used fake or modified versions of software to distribute malware, so it’s essential to be vigilant and cautious when downloading and installing the software. Overall, this software can be considered a safe and useful tool as long as it is used responsibly and obtained from a reputable source.

How to install software from the WinRAR file?

To install an application that is in a WinRAR archive, follow these steps:

  1. Extract the contents of the WinRAR archive to a folder on your computer. To do this, right-click on the archive and select ”Extract Here” or ”Extract to [folder name]”.”
  2. Once the contents have been extracted, navigate to the folder where the files were extracted.
  3. Look for an executable file with a .exeextension. This file is typically the installer for the application.
  4. Double-click on the executable file to start the installation process. Follow the prompts to complete the installation.
  5. After the installation is complete, you can launch the application from the Start menu or by double-clicking on the desktop shortcut, if one was created during the installation.

If you encounter any issues during the installation process, such as missing files or compatibility issues, refer to the documentation or support resources for the application for assistance.

Can x86 run on x64?

Yes, x86 programs can run on an x64 system. Most modern x64 systems come with a feature called Windows-on-Windows 64-bit (WoW64), which allows 32-bit (x86) applications to run on 64-bit (x64) versions of Windows.
When you run an x86 program on an x64 system, WoW64 translates the program’s instructions into the appropriate format for the x64 system. This allows the x86 program to run without any issues on the x64 system.
However, it’s important to note that running x86 programs on an x64 system may not be as efficient as running native x64 programs. This is because WoW64 needs to do additional work to translate the program’s instructions, which can result in slower performance. Additionally, some x86 programs may not work properly on an x64 system due to compatibility issues.

What is the verdict?

This app is well-designed and easy to use, with a range of useful features. It performs well and is compatible with most devices. However, may be some room for improvement in terms of security and privacy. Overall, it’s a good choice for those looking for a reliable and functional app.

Download schrodinger PyMOL Latest Version Free

Click on the button given below to download schrodinger PyMOL free setup. It is a complete offline setup for Windows and has excellent compatibility with x86 and x64 architectures.

File Password: 123